Repozytorium

Deciphering the conformational preferences of selenocystine: The crucial role of noncovalent interactions

Autorzy

Michał Wołczański

Przemysław Dopieralski

Rok wydania

2027

Czasopismo

Chemical Physics

Numer woluminu

613

Strony

113472/1-113472/9

DOI

10.1016/j.chemphys.2026.113472

Kolekcja

Naukowa

Język

Angielski

Typ publikacji

Artykuł

Streszczenie

Conformational studies were conducted for (R,R)-selenocystine in the gas phase. The analysis was performed using various methods and software. From the obtained sets of conformers, 10 structures with the lowest energies were selected and reoptimized using Density Functional Theory (DFT) methods. Harmonic and anharmonic vibrational frequencies were also calculated for each conformer. Energies of the lowest-energy conformers were recalculated at the second-order Møller–Plesset perturbation theory (MP2) and Coupled-Cluster Singles, Doubles, and perturbative Triples (CCSD(T)) levels of theory and the global minimum was determined. The Boltzmann-averaged vibrational spectra were obtained from static calculations, as well as from ab initio molecular dynamics simulations. The NCI method was used to analyze noncovalent interactions in several conformers. The present study suggests that the results of conformational analysis depend on the method and software used. It was also shown that intramolecular interactions play an important role in stabilizing the (R,R)-selenocystine molecule in the gas phase.

Słowa kluczowe

Selenocystine, Conformational analysis, Born–Oppenheimer molecular dynamics, Vibrational analysis, Hydrogen bonding, Chalcogen bonding

Licencja otwartego dostępu

CC-BY

Licencja na prawach której można swobodnie kopiować, rozprowadzać, zmieniać i remiksować objęty prawem autorskim utwór (Utwór-przedmiot prawa autorskiego) pod warunkiem podania imienia i nazwiska autora utworu pierwotnego oraz źródła pochodzenia utworu.

Pełny tekst licencji: https://creativecommons.org/licenses/by/3.0/pl/legalcode

Adres publiczny

http://dx.doi.org/10.1016/j.chemphys.2026.113472

Strona internetowa wydawcy

http://www.elsevier.com

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